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1

SciPy 1.0: fundamental algorithms for scientific computing in Python

Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, StÃ©fan J.,

Journal:

Year:

2020

Language:

english

File:

PDF, 1.71 MB

english, 2020

2

Author Correction: SciPy 1.0: fundamental algorithms for scientific computing in Python

Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, StÃ©fan J.,

Journal:

Year:

2020

File:

PDF, 735 KB

2020

3

Nothing to Sneeze at: A Full-Scale Computational Model of the Human Influenza Virion

Reddy, Tyler, Shorthouse, David, Parton, Daniel, Jefferys, Elizabeth, Fowler, Philip W., Chavent, Matthieu, Baaden, Marc, Sansom, Mark S.P.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 42 KB

english, 2015

4

CRISPR–Cas9 epigenome editing enables high-throughput screening for functional regulatory elements in the human genome

Klann, Tyler S, Black, Joshua B, Chellappan, Malathi, Safi, Alexias, Song, Lingyun, Hilton, Isaac B, Crawford, Gregory E, Reddy, Timothy E, Gersbach, Charles A

Journal:

Nature Biotechnology

Year:

2017

Language:

english

File:

PDF, 3.10 MB

english, 2017

5

Myf5−/−:MyoD−/−amyogenic fetuses reveal the importance of early contraction and static loading by striated muscle in mouse skeletogenesis

Irena Rot-Nikcevic, Tyler Reddy, Kevin J. Downing, Anne C. Belliveau, Benedikt Hallgrímsson, Brian K. Hall, Boris Kablar

Journal:

Development Genes and Evolution

Year:

2006

Language:

english

File:

PDF, 344 KB

english, 2006

6

Surface-Functionalized Carrier-Free Drug Nanorods for Leukemia

Krishnan, Vinu, Sarode, Apoorva, Bhatt, Rohit, Oliveira, Joshua D., Brown, Tyler D., Jiang, Y. P., Reddy Junutula, Jagath, Mitragotri, Samir

Journal:

Advanced Therapeutics

Year:

2018

Language:

english

File:

PDF, 1.19 MB

english, 2018

7

Elevated Manganese Concentrations in United States Groundwater, Role of Land Surface–Soil–Aquifer Connections

McMahon, Peter B., Belitz, Kenneth, Reddy, James E., Johnson, Tyler D.

Journal:

Environmental Science & Technology

Year:

2018

Language:

english

File:

PDF, 1.69 MB

english, 2018

8

Kinematic analysis of the gait of adult sheep during treadmill locomotion: Parameter values, allowable total error, and potential for use in evaluating spinal cord injury

Safayi, Sina, Jeffery, Nick D., Shivapour, Sara K., Zamanighomi, Mahdi, Zylstra, Tyler J., Bratsch-Prince, Joshua, Wilson, Saul, Reddy, Chandan G., Fredericks, Douglas C., Gillies, George T., Howard,

Journal:

Journal of the Neurological Sciences

Year:

2015

Language:

english

File:

PDF, 687 KB

english, 2015

9

Molecular Dynamics Simulations of an Entire HIV Virion

Reddy, Tyler, Perilla, Juan R.

Journal:

Biophysical Journal

Year:

2019

Language:

english

File:

PDF, 44 KB

english, 2019

10

Building a complete model of the outer envelope of an influenza A virion: how can this take us forward?

Journal:

Future Virology

Year:

2015

Language:

english

File:

PDF, 1.64 MB

english, 2015

11

Interpretation of biomolecular NMR spin relaxation parametersThis paper is one of a selection of papers published in this special issue entitled “Canadian Society of Biochemistry, Molecular & Cellular Biology 52nd Annual Meeting — Protein Folding: Principles and Diseases” and has undergone the Journal's usual peer review process.

Reddy, Tyler, Rainey, Jan K.

Journal:

Biochemistry and Cell Biology

Year:

2010

Language:

english

File:

PDF, 543 KB

english, 2010

12

Coordinated responses to individual tumor antigens by IgG antibody and CD8+ T cells following cancer vaccination

Hulett, Tyler W., Jensen, Shawn M., Wilmarth, Phillip A., Reddy, Ashok P., Ballesteros-Merino, Carmen, Afentoulis, Michael E., Dubay, Christopher, David, Larry L., Fox, Bernard A.

Journal:

Journal for ImmunoTherapy of Cancer

Year:

2018

Language:

english

File:

PDF, 2.17 MB

english, 2018

13

2217 REDUCING RADIATION EXPOSURE WHEN IMAGING PATIENTS WITH HEMATURIA

Neitlich, Tyler, Reddy, Neelima, Nieder, Alan, Neitlich, Jeffrey

Journal:

The Journal of Urology

Year:

2011

Language:

english

File:

PDF, 45 KB

english, 2011

14

Lipid Composition Modulates Membrane Protein Clustering

Duncan, Anna L., Koldsø, Heidi, Reddy, Tyler, Helie, Jean, Sansom, Mark S.P.

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 38 KB

english, 2016

15

Intensity modulated proton therapy (IMPT) – The future of IMRT for head and neck cancer

Moreno, Amy C., Frank, Steven J., Garden, Adam S., Rosenthal, David I., Fuller, Clifton D., Gunn, Gary B., Reddy, Jay P, Morrison, William H., Williamson, Tyler D., Holliday, Emma B., Phan, Jack, Blan

Journal:

Year:

2019

Language:

english

File:

PDF, 1.28 MB

english, 2019

16

Hybrid Endovascular Pseudoaneurysm and Pulmonary Stenosis Repair in Bovine Arch

Venkatapuram Seenu Reddy, Jeffrey D. McNeil, Matthew W. Crozier, Tyler L. Bloomer, Helen Marie Merritt, Jorge E. Lopera

Journal:

The Annals of Thoracic Surgery

Year:

2011

Language:

english

File:

PDF, 642 KB

english, 2011

17

Enhanced MyoD-Induced Transdifferentiation to a Myogenic Lineage by Fusion to a Potent Transactivation Domain

Kabadi, Ami M., Thakore, Pratiksha I., Vockley, Christopher M., Ousterout, David G., Gibson, Tyler M., Guilak, Farshid, Reddy, Timothy E., Gersbach, Charles A.

Journal:

ACS Synthetic Biology

Year:

2015

Language:

english

File:

PDF, 5.97 MB

english, 2015

18

Defining Criteria for Selective Operative Management of Pancreatic Cystic Lesions: Does Size Really Matter?

Eugene P. Ceppa, Sebastian G. De la Fuente, Srinevas K. Reddy, Sandra S. Stinnett, Bryan M. Clary, Douglas S. Tyler, Theodore N. Pappas, Rebekah R. White

Journal:

Journal of Gastrointestinal Surgery

Year:

2010

Language:

english

File:

PDF, 183 KB

english, 2010

19

Efficacy of automated biopsy guns versus conventional biopsy needles in the pygmy pig.

Hopper, K D, Baird, D E, Reddy, V V, Landis, J R, Parker, S H, Tyler, H N, Ownbey, J L, McCauslin, M A, Yakes, W F, Sabatelli, F W

Journal:

Year:

1990

Language:

english

File:

PDF, 1.16 MB

english, 1990

20

Utilization of a Web-Based Conferencing Platform to Improve Global Radiation Oncology Education and Quality—Proof of Principle Through Implementation in India

Robin, Tyler P., Grover, Surbhi, Reddy Palkonda, Vijay Anand, Fisher, Christine M., Gehl, Brigitta, Bhattacharya, Kausik, Mallick, Indranil, Bhattasali, Onita, Viswanathan, Akila N., Sastri (Chopra),

Journal:

International Journal of Radiation Oncology*Biology*Physics

Year:

2019

Language:

english

File:

PDF, 485 KB

english, 2019

21

Membrane Crowding and Complexity: Interplay between Protein-Lipid Interactions, Clustering and Diffusion

Duncan, Anna L., Koldsø, Heidi, Reddy, Tyler J., Hélie, Jean, Sansom, Mark S.P.

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 46 KB

english, 2017

22

How nanoscale protein interactions determine the mesoscale dynamic organisation of bacterial outer membrane proteins

Chavent, Matthieu, Duncan, Anna L., Rassam, Patrice, Birkholz, Oliver, Hélie, Jean, Reddy, Tyler, Beliaev, Dmitry, Hambly, Ben, Piehler, Jacob, Kleanthous, Colin, Sansom, Mark S. P.

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 2.30 MB

english, 2018

23

Multifaceted Substrate Capture Scheme of a Rhomboid Protease

Reddy, Tyler, Rainey, Jan K.

Journal:

Journal of Physical Chemistry B

Year:

2012

Language:

english

File:

PDF, 3.34 MB

english, 2012

24

KIC, a Novel Ca2⁺ Binding Protein with One EF-Hand Motif, Interacts with a Microtubule Motor Protein and Regulates Trichome Morphogenesis

Vaka S. Reddy, Irene S. Day, Tyler Thomas and Anireddy S. N. Reddy

Journal:

Year:

2004

Language:

english

File:

PDF, 3.82 MB

english, 2004

25

VENI, VIDI, Voronoi: Attacking Viruses with Spherical Voronoi Diagrams

Reddy, Tyler, Hemsley, Ross, Edmondson, Edd, Nowaczyk, Nikolai, Pitt-Francis, Joe, Sansom, Mark S.P.

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 42 KB

english, 2016

26

Transmural Polypoid Endometriosis of the Sigmoid Colon

Ramai, Daryl, Linn, Sandars, Murphy, Tyler, Reddy, Madhavi

Journal:

Journal of Gastrointestinal Surgery

Year:

2018

Language:

english

File:

PDF, 2.59 MB

english, 2018

27

Morphometric and genetic evidence for four species of gentoo penguin

Tyler, Joshua, Bonfitto, Matthew T., Clucas, Gemma V., Reddy, Sushma, Younger, Jane L.

Journal:

Ecology and Evolution

Year:

2020

File:

PDF, 987 KB

2020

28

Primary and Secondary Dimer Interfaces of the Fibroblast Growth Factor Receptor 3 Transmembrane Domain: Characterization via Multiscale Molecular Dynamics Simulations

Reddy, Tyler, Manrique, Santiago, Buyan, Amanda, Hall, Benjamin A., Chetwynd, Alan, Sansom, Mark S. P.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.81 MB

english, 2014

29

Molecular Dynamics Simulations of the Transmembrane Helix of the FGFR3 Receptor in POPC and DPPC

Reddy, Tyler, Hall, Benjamin, Chetwynd, Alan, Sansom, Mark S.P.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 34 KB

english, 2011

30

Membrane Protein Crowding at the Mesoscale: Insights from MD Simulations

Chavent, Matthieu G., Duncan, Anna, Helie, Jean, Rassam, Patrice, Reddy, Tyler, Goose, Joseph, Kleanthous, Colin, Sansom, Mark S.P.

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 38 KB

english, 2016

31

Structural features of the apelin receptor N-terminal tail and first transmembrane segment implicated in ligand binding and receptor trafficking

Langelaan, David N., Reddy, Tyler, Banks, Aaron W., Dellaire, Graham, Dupré, Denis J., Rainey, Jan K.

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2013

Language:

english

File:

PDF, 1.53 MB

english, 2013

32

809 Does Size Really Matter in the Resection of Primary Cystic Neoplasms of the Pancreas?

Ceppa, Eugene P., de la Fuente, Sebastian G., Reddy, Srinevas K., Stinnett, Sandra, Clary, Bryan M., Tyler, Douglas S., Pappas, Theodore N., White, Rebekah

Journal:

Gastroenterology

Year:

2009

Language:

english

File:

PDF, 283 KB

english, 2009

33

Structural and Functional Characterization of Transmembrane Segment IX of the NHE1 Isoform of the Na + /H + Exchanger

Reddy, Tyler, Ding, Jie, Li, Xiuju, Sykes, Brian D., Rainey, Jan K., Fliegel, Larry

Journal:

Journal of Biological Chemistry

Year:

2008

Language:

english

File:

PDF, 1.21 MB

english, 2008

34

Potassium and phosphorus have no effect on severity of charcoal rot of soybean

Mengistu, Alemu, Yin, Xinhua, Bellaloui, Nacer, McCLURE, ANGELA M., Tyler, Don D., Reddy, Krishna N.

Journal:

Canadian Journal of Plant Pathology

Year:

2016

File:

PDF, 600 KB

2016

35

Disruption of TET2 promotes the therapeutic efficacy of CD19-targeted T cells

Fraietta, Joseph A., Nobles, Christopher L., Sammons, Morgan A., Lundh, Stefan, Carty, Shannon A., Reich, Tyler J., Cogdill, Alexandria P., Morrissette, Jennifer J. D., DeNizio, Jamie E., Reddy, Shant

Journal:

Year:

2018

Language:

english

File:

PDF, 3.70 MB

english, 2018

36

HIBERNATING MYOCARDIUM AS A CAUSE OF RECURRENT VENTRICULAR TACHYCARDIA - UTILITY OF FDG-PET IMAGING

Moore, Tyler, Reddy, Siddharth, Poornima, Indu G.

Journal:

Journal of the American College of Cardiology

Year:

2020

File:

PDF, 322 KB

2020

37

Evidence for the involvement of neurotrophins in muscle transdifferentiation and acetylcholine receptor transformation in the esophagus of Myf5−/−:MyoD−/− and NT-3−/− embryos

Tyler Reddy, Boris Kablar

Journal:

Developmental Dynamics

Year:

2004

Language:

english

File:

PDF, 716 KB

english, 2004

38

Methodologies for the analysis of instantaneous lipid diffusion in md simulations of large membrane systems

Chavent, Matthieu, Reddy, Tyler, Goose, Joseph, Dahl, Anna Caroline E., Stone, John E., Jobard, Bruno, Sansom, Mark S. P.

Journal:

Faraday Discussions

Year:

2014

Language:

english

File:

PDF, 6.05 MB

english, 2014

39

VENTRICULAR TACHYCARDIA IN A YOUNG ATHLETE: A LATE MANIFESTATION OF KAWASAKI DISEASE?

Reddy, Siddharth, Moore, Tyler, Biederman, Robert

Journal:

Journal of the American College of Cardiology

Year:

2020

File:

PDF, 232 KB

2020

40

Computer Modeling to Evaluate the Impact of Technology Changes on Resident Procedural Volume

Grenda, Tyler R., Ballard, Tiffany N. S., Obi, Andrea T., Pozehl, William, Seagull, F. Jacob, Chen, Ryan, Cohn, Amy M., Daskin, Mark S., Reddy, Rishindra M.

Journal:

Journal of Graduate Medical Education

Year:

2016

File:

PDF, 433 KB

2016

41

Computational Virology: from the Inside Out

Reddy, Tyler, Sansom, Mark S.P.

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2016

Language:

english

File:

PDF, 1.25 MB

english, 2016

42

Innovative Scheduling Solutions for Graduate Medical Education

Ballard, Tiffany N. S., Grenda, Tyler R., Cohn, Amy M., Daskin, Mark S., Seagull, F. Jacob, Reddy, Rishindra M.

Journal:

Journal of Graduate Medical Education

Year:

2015

Language:

english

File:

PDF, 91 KB

english, 2015

43

Scalable Analysis of Authentic Viral Envelopes on FRONTERA

Gonzalez-Arias, Fabio, Reddy, Tyler, Stone, John, Hadden-Perilla, Jodi, Perilla, Juan

Journal:

Computing in Science & Engineering

Year:

2020

File:

PDF, 7.52 MB

2020

44

Predictors of Hospital Readmission after Lung Transplantation

Grenda, Tyler, Weir, William B., Lama, Vibha, Reddy, Rishindra M., Chan, Kevin M., Chang, Andrew C., Lin, Jules

Journal:

Journal of the American College of Surgeons

Year:

2014

Language:

english

File:

PDF, 46 KB

english, 2014

45

Plasmapheresis and intravenous immune globulin for the treatment of D alloimmunization in pregnancy

Deborah J. Novak, Lisa N. Tyler, Ramakrishna L. Reddy, Michael J. Barsoom

Journal:

Journal of Clinical Apheresis

Year:

2008

Language:

english

File:

PDF, 56 KB

english, 2008

46

Beyond Fatty Acid Methyl Esters: Expanding the Renewable Carbon Profile with Alkenones from Isochrysis sp.

O’Neil, Gregory W., Carmichael, Catherine A., Goepfert, Tyler J., Fulton, James M., Knothe, Gerhard, Pui Ling Lau, Connie, Lindell, Scott R., Mohammady, Nagwa G-E., Van Mooy, Benjamin A. S., Reddy, Ch

Journal:

Year:

2012

Language:

english

File:

PDF, 753 KB

english, 2012

47

[IEEE 2009 IEEE Mobile WiMAX Symposium (MWS) - Napa Valley, California, USA (2009.07.9-2009.07.10)] 2009 IEEE Mobile WiMAX Symposium - Distributed Trust Relationship and Polynomial Key Generation for IEEE 802.16m Networks

DeCarlo, Andrew, Porthy, Jonathan, Tyler, Sherman, Xie, Bin, Reddy, Ranga, Zhao, David

Year:

2009

Language:

english

File:

PDF, 398 KB

english, 2009

48

[ASME ASME 2013 International Mechanical Engineering Congress and Exposition - San Diego, California, USA (Friday 15 November 2013)] Volume 11: Emerging Technologies - Using the Bootstrap Method to Determine Uncertainty Bounds for Change Point Utility Bill Energy Models

Tyler, James Clay, Reddy, T. Agami

Year:

2013

Language:

english

File:

PDF, 561 KB

english, 2013

49

Membrane Compartmentalization Reduces the Mobility of Lipids and Proteins within a Model Plasma Membrane

Koldsø, Heidi, Reddy, Tyler, Fowler, Philip W., Duncan, Anna L., Sansom, Mark S. P.

Journal:

Journal of Physical Chemistry B

Year:

2016

Language:

english

File:

PDF, 1.84 MB

english, 2016

50

Evolution of Concise and Flexible Synthetic Strategies for Trichostatic Acid and the Potent Histone Deacetylase Inhibitor Trichostatin A

Cosner, Casey C., Bhaskara Reddy Iska, Vijaya, Chatterjee, Anamitra, Markiewicz, John T., Corden, Steven J., Löfstedt, Joakim, Ankner, Tobias, Richer, Joshua, Hulett, Tyler, Schauer, Douglas J., Wiest

Journal:

European Journal of Organic Chemistry

Year:

2013

Language:

english

File:

PDF, 1.05 MB

english, 2013

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